Publications

Journal Articles

Fouladivanda, M., Kazemi, K., Makki, M., Khalilian, M., Danyali, H., Gervain, J., Aarabi, A. Multi-scale structural rich-club organization of the brain in full-term newborns: a combined DWI and fMRI study, J Neural Engineering, 2021.
Saadani-Makki, F., Aarabi, A., Fouladivanda, M., Kazemi, K., Makki, M. Sexual Dimorphisms and Asymmetries of the Thalamo-Cortical Pathways and Subcortical Grey Matter of Term Born Healthy Neonates: An Investigation with Diffusion Tensor MRI, Diagnostics 11 (3), 560, 2021.
Mohammadi, H., Aarabi, A., Rezaei, M., Khazaie, H., Brand, S. Sleep Spindle Characteristics in Obstructive Sleep Apnea Syndrome (OSAS), Frontiers in neurology 12, 134, 2021.
Azizollahi, H., Aarabi, A., Wallois, F. Effects of uncertainty in head tissue conductivity and complexity on EEG forward modeling in neonates. J Neural Engineering, 2020.
Ahmadi, M., Kazemi, K., Kuc, K., Cybulska-Klosowicz, A., Zakrzewska, M., Racicka-Pawlukiewicz, E., Helfroush, M. S., Aarabi, A., Cortical source analysis of resting state EEG data in children with attention deficit hyperactivity disorder. Clin Neurophysiol. 131, 2115-2130, 2020.
Ghimatgar, H., Kazemi, K., Helfroush, M. S., Pillay, K., Dereymaker, A., Jansen, K., Vos, M., Aarabi, A., Neonatal EEG sleep stage classification based on deep learning and HMM. J Neural Eng. 17, 036031, 2020.
Noorizadeh, N., Kazemi, K., Danyali, H., Babajani-Feremi, A., Aarabi, A., Multi-atlas based neonatal brain extraction using atlas library clustering and local label fusion, Multimedia Tools and Applications, 1-23, 2020.
Ghimatgar, H., Kazemi, K., Helfroush, M. S., Aarabi, A. An automatic single-channel EEG-based sleep stage scoring method based on hidden Markov model, Journal of Neuroscience Methods, 2019.
Ahmadi, M., Kazemi, K., Aarabi, A., Niknam, T., Helfroush, M. S., Image segmentation using multilevel thresholding based on modified bird mating optimization, Multimedia Tools and Applications, 1-25, 2019.
Noorizadeh, N., Kazemi, K., Danyali, Aarabi, A., Multi-atlas based neonatal brain extraction using a two-level patch-based label fusion strategy, Biomedical Signal Processing and Control 54, 101602, 2019.
Aarabi, A., Huppert, T.J., Assessment of the effect of data length on the reliability of resting-state fNIRS connectivity measures and graph metrics, Biomedical Signal Processing and Control 54, 101612, 2019.
Ghimatgar, H., Kazemi, K., Helfroush, M. S., Aarabi, A.,  An improved feature selection algorithm based on graph clustering and ant colony optimization, Knowledge-Based Systems 159, 270-285.
Aarabi, A., Osharina V., Wallois F., Effect of confounding variables on hemodynamic response function estimation using averaging and deconvolution analysis: An event-related NIRS study, Neuroimage, 2017.
Aarabi A, He B, Seizure prediction in patients with focal hippocampal epilepsy, Clinical Neurophysiology, 2017.
Osharina V, Aarabi A, Manoochehri M, Mahmoudzadeh M, Wallois F. Hemodynamic Changes Associated with Interictal Spikes Induced by Acute Models of Focal Epilepsy in Rats: A Simultaneous Electrocorticography and Near-Infrared Spectroscopy Study. Brain topography. 2017.
Hendrik Santosa1, Ardalan Aarabi, Susan B. Perlman, Theodore J. Huppert,  Characterization and correction of the false-discovery rates in resting state connectivity using functional near-infrared spectroscopy, Journal of Biomedical Optics, 2017.
Adebimpe A, Aarabi A, Bourel-Ponchel E, Mahmoudzadeh M, Wallois F. EEG resting state analysis of cortical sources in patients with benign epilepsy with centrotemporal spikes. NeuroImage Clinical. 2015;9:275-82.
H Azizollahi, A Aarabi, F Wallios, Effect of structural complexities in head modelling on neonatal EEG source analysis, Clinical Neurophysiology 128 (9), e262-e263, 2017.N Noorizadeh, K Kazemi, A Aarabi, HA Danyali, A Babajani-feremi, An automated multi-atlas based method for brain extraction in neonatal MR images, Human Brain Mapping, 2017.
Adebimpe A, A Aarabi, C Herbele, F Wallois,  Influence of temporal theta burst activity on the functional connectivity of the cortical networks in preterm neonates, Clinical Neurophysiology 127 (3), e28-e29, 2015.
Adebimpe A, A Aarabi, E Bourel, M Mahmoudzadeh, F Wallois, brain network analysis of EEG functional connectivity in patients with benign childhood epilepsy with centro-temporal spikes, Clinical Neurophysiology 127 (3), e60, 2015.
Azizollahi H, Aarabi A, Wallois F. Effects of uncertainty in head tissue conductivity and complexity on EEG forward modeling in neonates. Human brain mapping. 2016;37:3604-22.
Aarabi A, Huppert T, Characterization of the relative contributions from systemic physiological noise to functional Near-infrared Spectroscopy (fNIRS) using single-channel independent component analysis, Neurophotonics 2016.
Adebimpe A, Aarabi A, Bourel-Ponchel E, Mahmoudzadeh M, Wallois F. Functional Brain Dysfunction in Patients with Benign Childhood Epilepsy as Revealed by Graph Theory. PloS one. 2015;10:e0139228.
Adebimpe A, Aarabi A, Bourel-Ponchel E, Mahmoudzadeh M, Wallois F. EEG Resting State Functional Connectivity Analysis in Children with Benign Epilepsy with Centrotemporal Spikes. Frontiers in neuroscience. 2016;10:143.
Adebimpe A, A Aarabi, M Mahmoudzadeh, E Bourel-Ponchel, F Wallois, comparison of resting state networks between normal children and adolescents with benign childhood epilepsy with centrotemporal spikes: a high density EEG study, Clinical Neurophysiology 125, S80-S81.
H Azizollahi, A Aarabi, F Wallois, Construction of realistic neonatal head model based on co-registered CT-MR images, Clinical Neurophysiology, S97-S98.
Aarabi A, He B, 2014. Seizure prediction in hippocampal and neocortical epilepsy using a model-based approach. Clin Neurophysiol. 125(5):930-40
Barker JW, Aarabi A, Huppert TJ, 2013. Autoregressive model based algorithm for correcting motion and serially correlated errors in fNIRS. Biomed Opt Express 4, 1366-1379.
Aarabi A, He B, 2012. A rule-based seizure prediction method for focal neocortical epilepsy. Clin Neurophysiol 123, 1111-1122.
Aarabi A, Grebe R, Berquin P, Bourel Ponchel E, Jalin C, Fohlen M, Bulteau C, Delalande O, Gondry C, Heberle C, Moullart V, Wallois F, 2012. Spatiotemporal source analysis in scalp EEG vs. intracerebral EEG and SPECT: a case study in a 2-year-old child. Neurophysiol Clin 42, 207-224.
Nazari MA, Wallois F, Aarabi A, Berquin P, 2011. Dynamic changes in quantitative electroencephalogram during continuous performance test in children with attention-deficit/hyperactivity disorder. Int J Psychophysiol 81, 230-236.
Osharina V, Ponchel E, Aarabi A, Grebe R, Wallois F, 2010. Local haemodynamic changes preceding interictal spikes: a simultaneous electrocorticography (ECoG) and near-infrared spectroscopy (NIRS) analysis in rats. Neuroimage 50, 600-607.
Nazari MA, Berquin P, Missonnier P, Aarabi A, Debatisse D, De Broca A, Wallois F, 2010. Visual sensory processing deficit in the occipital region in children with attention-deficit / hyperactivity disorder as revealed by event-related potentials during cued continuous performance test. Neurophysiol Clin 40, 137-149.
Aarabi A, Kazemi K, Grebe R, Moghaddam HA, Wallois F, 2009. Detection of EEG transients in neonates and older children using a system based on dynamic time-warping template matching and spatial dipole clustering. Neuroimage 48, 50-62.
Aarabi A, Fazel-Rezai R, Aghakhani Y. A fuzzy rule-based system for epileptic seizure detection in intracranial EEG. Clin Neurophysiol. 2009 120(9):1648-57.
Aarabi A, Wallois F, Grebe R, 2008. Does spatiotemporal synchronization of EEG change prior to absence seizures? Brain Res 1188, 207-221.
Wallois F, Aarabi A, Kongolo G, Leke A, Grebe R, 2008. Inverse coupling between respiratory and cardiac oscillators in a life-threatening event in a neonate. Auton Neurosci 143, 79-82.
Roche-Labarbe N, Aarabi A, Kongolo G, Gondry-Jouet C, Dumpelmann M, Grebe R, Wallois F, 2008. High-resolution electroencephalography and source localization in neonates. Hum Brain Mapp 29, 167-176.
Aarabi A, Grebe R, Wallois F, 2007. A multistage knowledge-based system for EEG seizure detection in newborn infants. Clin Neurophysiol 118, 2781-2797.
Aarabi A, Wallois F, Grebe R, 2006. Automated neonatal seizure detection: a multistage classification system through feature selection based on relevance and redundancy analysis. Clin Neurophysiol 117, 328-340.

Book chapter

Aarabi A, Wallois F, Grebe R, 2004. Diagnostic Techniques for the Investigation of Epileptic Seizures in Children and Newborns, II International Conference on Medical Diagnostic Techniques and Procedures, Indian Institute of Technology, Madras, India.

Conference Papers

Fouladivanda, M., Kazemi, K., Danyali, H., Aarabi, A., Multiscale Structural Brain Network Analysis in Full-term Neonates, 4rd Iranian Symposium on Brain Mapping Updates (ISBM), Tehran, Iran, 2020
Fouladivanda, M., Kazemi, K., Danyali, H., Aarabi, A., Structural and Functional Rich Club Organization of the Brain in Full-term Newborns, 8th International Conference of Cognitive Science, Tehran, Iran, 2020
Ghimatgar, H., Kazemi, K., Helfroush, M. S., Aarabi, A., EEG-based automatic sleep stage classification using a Long Short-Term Memory (LSTM) deep learning network, 3rd Iranian Symposium on Brain Mapping Updates (ISBM), Tehran, Iran, 2019
Khalilian, M.S., Fouladivanda, M., Kazemi, K., Helfroush, M. S., Aarabi, A., Evaluation of the Effect of Multiple b-Values on Topological Properties of Brain Structural Networks at Different Spatial Scales Using Multi-shell Diffusion MRI Data, 3rd Iranian Symposium on Brain Mapping Updates (ISBM), Tehran, Iran, 2019
Jafakesh, S., Kazemi, K., Ekhtiari, H., Helfroush, M. S., Aarabi, A., Reduced small-world but hyper connected in cocaine users: A resting state fMRI study, 8th Neuroscience Congress, Tehran, Iran, 2019
Bazregarzadeh, H., Kazemi, K., Helfroush, M. S., Aarabi, A., A Multi-stream convolutional neural network for fatigue detection using EEG signals, 8th Neuroscience Congress, Tehran, Iran, 2019
Noorizadeh, N., Kazemi, K., Danyali, H., Aarabi, A., A Multi-Atlas Patch-Based Method for Neonatal Brain Extraction, 8th Neuroscience Congress, Tehran, Iran, 2019
Khalilian, M.S., Fouladivanda, M., Kazemi, K., Helfroush, M. S., Aarabi, A., Multi-scale brain structural connectivity analysis using diffusion tensor imaging data, 7th Neuroscience Congress, Tehran, Iran, 2018
Ramezani, F., Kazemi, K., Danyali, H., Aarabi, A., Effect of Brain Tissue Segmentation Errors on EEG Forward Solutions, 8th Neuroscience Congress, Tehran, Iran, 2018
Ghimatgar, H., Kazemi, K., Helfroush, M. S., Aarabi, A., EEG-based sleep stage classification using morphological features and Support Vector Machine, 6th Neuroscience Congress, Tehran, Iran, 2017.
Negar Noorizadeh, Kamran Kazemi, Ardalan Aarabi, Habib Alah Danyali,  Abbas Babajani ­feremi, An automated multi­atlas based method for brain extraction in neonatal MR images, Human Brain Mapping, 2017.
Ardalan Aarabi, Victoria Osharina, Fabrice Wallois, Assessing the effect of confounding factors on estimates of the NIRS hemodynamic response function using single-type event-related designs – A comparative study between averaging and deconvolution analysis, fNIRS, 2016.
Adebimpe A, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. The comparison of resting state networks between normal children and adolescents with benign childhood epilepsy with centrotemporal spikes – a high density EEG study, ICCN, Amiens, France.
Azizollahi H, Aarabi A, Wallois F, 2014. Construction of realistic neonatal head model based on co-registered CT-MR images (Amiens/FR), ICCN, Amiens, France.
Adebimpe A, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. Resting-state EEG functional connectivity in benign childhood epilepsy, Society for Clinical Neurophysiology and Language (SNCLF), Angers, France.
Adebimpe AA, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. Resting-state EEG functional connectivity in benign childhood epilepsy, society for clinical neurophysiology (SNCLF) Angers, June 25-27.
Adebimpe AA, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. Brain networks and functional connectivity in benign childhood epilepsy. Multielectrode systems and Signal processing for Neurosciene Gif sur Yvette, France.
Adebimpe AA, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. Modeling the brain as a small world network, Young Researchers Network on Complex Systems, Lucca, Italy.
Adebimpe AA, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. Altered brain functional connectivity in patients with benign childhood epilepsy, INCF Congress, Leiden, The Netherlands.
Adebimpe AA, Aarabi A, Mahmoudzadeh M, Bourel-Ponchel E, Wallois F, 2014. The disruption of resting state networks in adolescents with benign childhood epilepsy with centrotemporal spikes, Structure Federative de Researche, UPJV, Amiens.
Barker JW, Aarabi A, Panigrahy A, 2013. Validation of fNIRS in the visual cortex of neonates via simultaneous fNIRS/fMRI imaging, SPIE, USA.
Huppert TJ,  Barker JW,  Aarabi A, 2013. Comparison of brain-related, systemic physiological, and instrumentation noise during a test-retest study of brain responses with concurrent MRI and NIRS, SPIE, USA.
Aarabi A,  Huppert TJ, 2013. Characterization of the  contributions  of systemic physiology to functional NIRS data using single-channel ICA decomposition of fNIRS signals, SPIE, USA.
Aarabi A, He B, 2011. Seizure Prediction in Patients with Focal Neocortical epilepsy, AES, Abst. 2.129.
Aarabi A, He B, 2011. Seizure Prediction in Intracranial EEG: A Patient-Specific Rule-Based Approach, EMBC, ThA21.
Rabbi AF,  Aarabi A,  Fazel-Rezai R, 2010. Fuzzy  rule-based  seizure  prediction based on correlation dimension changes in intracranial EEG. Conference proceedings:  Annual International  Conference  of  the  IEEE  Engineering  in  Medicine  and  Biology  Society.  IEEE Engineering in Medicine and Biology Society. Conference; 2010:3301-4.
Aarabi A, He B, 2009. Seizure  Prediction  in  Patients  with  Focal  Neocortical  Epilepsy,  AES.
Aarabi A,  Fazel-Rezai  R,  Aghakhani  Y, 2009.  EEG  Seizure  Prediction:  Measures  and Challenges. 31st Annual International IEEE EMBS Conference.
Aarabi A, Fazel-Rezai R, Aghakhani Y, 2009. Seizure Detection in Intracranial EEG Using a Fuzzy Inference System, 31st Annual International IEEE EMBS Conference.
Wallois F, Aarabi A, Berquin P, 2006. Absences avec composante partielle. XVI Congrès de la société Française de Neuropédiatrie, Strasbourg.
Nazari MA, Aarabi A, Berquin P, Wallois F, 2006. Temporal and topographic changes of P300 wave during a cognitive task: A preliminary results. II National Congress of Iranian Psychological Association. Tehran, Iran.
Roche-Labarbe N, Vishnoï G, Aarabi A, Kongolo G, Krim G, Grebe R, Wallois F, 2005. La Spectroscopie dans le proche InfraRouge (NIRS). XVe Congrès de la Société Française de Neurologie Pédiatrique, Amiens, France.
Aarabi A, Roche-Labarbe N, Gondry-Jouet C, Berquin P, Moullart V, Montigny A, Van Burik M, Meyer ME, Grebe R, Wallois F, 2005. Localisation des sources des graphoéléments épileptiques dans les épilepsies réfractaires de l'enfant : Apport de l'EEG haute résolution. XVe Congrès de la Société Française de Neurologie Pédiatrique, Amiens, France.
Aarabi A, Wallois F, Héberlé C, Berquin P, Grebe R, 2005. Preictal state detection from EEG of the patients with absence seizure using entropy measure. XVe Congrès de la Société Française de Neurologie Pédiatrique, Amiens, France.
Aarabi A, Wallois F, Grebe R, 2005. Preictal state detection of absence seizures using mutual interdependence measure, IFMBE Conference, EMBEC'05, 3rd European Medical and Biological Engineering Conference, Czech Republic.
Aarabi A, Grebe R, Wallois F, 2005. Relevant Feature Selection for Seizure Detection in Neonates, SPS- DARTS, Belgium.
Aarabi A, Wallois F, Grebe R, 2005. Feature Selection Based on Discriminant and Redundancy Analysis Applied to Seizure Detection in Newborn, 2nd International IEEE EMBS Conference on Neural Engineering, USA.
Aarabi A, Wallois F, Grebe R, 2005. EEG Seizure Prediction Using Entropy Measure. Conference Proceedings of the International Epilepsy Congress, Paris, France. Epilepsia, vol. 46, suppl. 6.
Aarabi A, Roche-Labarbe N, Kongolo G, Montigny A, Van Burik M, Grebe R, Wallois F, 2005. Automatic spike detection for source localization in neonates. XVe Congrès de la Société Française de Neurologie Pédiatrique, Amiens, France.
Roche-Labarbe N, Aarabi A, Berquin P, Grebe R, Wallois F, 2005. EEG haute résolution et localisation de sources chez les nouveaux-nés prématurés. XVe Congrès de la Société Française de Neurologie Pédiatrique, Amiens, France.
Wallois F, Aarabi A, Roche Labarbe N, Grebe R, 2005. Principal and Independent Component Analysis of Automatically Detected Positive Temporal Sharp Waves for Source Localisation in Neonates. Conference Proceedings of the International Epilepsy Congress, Paris, France. Epilepsia, vol. 46, suppl. 6.
Roche-Labarbe N, Aarabi A, Kongolo G, Krim G, Grebe R, Wallois F, 2004. Electroencephalographic (EEG) dipole source localization in preterm neonates. Conference Proceedings, Forum of the European Neuroscience Society, Lisbonne, Portugal.
Wallois F, Reinhard G, Kongolo G, Aarabi A, Krim G, . Synchronisation cardio-respiratoire et malaise grave de type " mort subite " chez un prématuré de 34 semaines : hypothèses physiopathologiques Cardio-respiratory synchronization and SIDS like disease in a 34 preterm baby. Société Française de Neurologie pédiatrique, XIV° CONGRES SFNP - PARIS 2004.
Aarabi A, Roche-Labarbe N, Montigny A, Gondry C, Kongolo G, Berquin P, Van Burik M, Grebe R, Wallois F, 2004. Automatic spike detection for source localization in children and neonates. Conference Proceedings, Annual Meeting of the American Epilepsy Society, December 2004, New Orleans, USA.
Aarabi A, Wallois F, Grebe R, 2004. Diagnostic Techniques for the Investigation of Epileptic Seizures in Children and Newborns, II International Conference on Medical Diagnostic Techniques and Procedures, Indian Institute of Technology, Madras, India.
Wallois F, Roche N, Aarabi A, Berquin P, Gondry-Jouet C, Moullart V, Macron M, Grebe R, 2004. EEG source localization in epileptic children and newborns. Oslo.
Wallois F, Reinhard G, Kongolo G, Aarabi A, Krim G, 2004. Synchronisation cardio-respiratoire chez le nouveau-né prématuré. Journée de Recherches Clinique du CHU de Reims.
Aarabi A, Roche N, Grebe R, Wallois F, 2004. Détection automatique d'activités cérébrales appliquée à la localisation de sources EEG chez le nouveau-né à terme et prématuré Congrès de la Société de Neurophysiologie Clinique de Langue Française. Marseille.
Aarabi A, Erfanian A, 2000. Brainstem auditory evoked potential estimation using Wavelet Networks, The 8th Iranian Conference on Electrical Engineering (ICEE), pp. 277-286, Isfahan, Iran.
Aarabi A, Erfanian A, 1999. Neural adaptive filters for estimating brainstem auditory evoked potential (AEP), Proceedings of the first joint BMES/EMBS Serving Humanity, advancing Technology, p. 431, Atlanta, GA, USA.
Aarabi A, Erfanian A, Elkhani M, 1999. Brainstem auditory evoked potential estimation using Radial Basis Function (RBF) Neural Networks, The 7th Iranian Conference on Electrical Engineering (ICEE), pp. 235-243, Tehran, Iran.